#NEXUS
begin data;
	dimensions ntax=9 nchar=38;
	format datatype=dna missing=? gap=-;
charlabels 1 a, 2 b, 3 c, 4 f, 8 A, 9 B, 18 x, 23 '1,2,3 can''t decide for a name?!', 38 final;
matrix
t1                                    A-CG-T-gttgtctc-t------a-gttgtctct-t-t
't2 the name'                         A-CGcT-gt----tc-t----aca-gt----tct-t-t
'isn''that [a] strange name?'         A-CGcT-gttgtct------aaca-gttgtct------
'one should be punished, for (that)!' A-CG-T--------------------------------
t5                                    A-CG-T--agt?-??-??--?-----agt?-???-???
t6                                    AcCGtT-?-aaaaaa-a-acgcta-?-aaaaaaa-a-a
t7                                    A?CGgT-gggggggg-g-??-?gg-ggggggggg-g-g
t8                                    AtCGtT-tttttttt-?-tttttt-ttttttttt-?-?
t9                                    cccccc-ccccccccNc-cccccc-cccccccccNc-c
;
end;

begin sets;
charset bigchunk = 2-37;
charset big = 1 3-4 6;
charset byname = 1 4-23;
charset mux = 1-2 4 7-13\2 14-18 20 22 27-31\2 34 37;
charset secondhalf = 19-38;
charset firsthalf = 1-18;
charset mix = 1-2 4 9-13\2 18-22\2 27-31\2 34 37;
charset c3 = 13-18;
charset c2 = 7-12;
charset c1 = 1-6;
charset pos2 = 2 4 9-13\2 18-22\2 27-31\2 34 37;
charset pos3 = 3-7\2 12-16\2 21-25\2 30 32-38\3;
charset pos1 = 1 6-10\2 15-19\2 24-28\2 33 36;
taxset tbyname2 = 'isn''that [a] strange name?' 'one should be punished, for (that)!' 't2 the name' t5 t6 t7;
taxset tbyname3 = t1 't2 the name';
taxset tbyname1 = 'isn''that [a] strange name?' 'one should be punished, for (that)!' t1 't2 the name' t5 t6;
taxset reference = 'isn''that [a] strange name?' 'one should be punished, for (that)!' t1 't2 the name' t5 t6;
taxset normal = 'isn''that [a] strange name?' 'one should be punished, for (that)!' t1 t5 t6 t8;
charpartition part = one: 1-6, two: 7-12, three: 13-18;
charpartition codons = a: 1 6-10\2 15-19\2 24-28\2 33 36, b: 2 4 9-13\2 18-22\2 27-31\2 34 37, c: 3-7\2 12-16\2 21-25\2 30 32-38\3;
taxpartition taxpart = badnames: 'isn''that [a] strange name?' 'one should be punished, for (that)!' 't2 the name', goodnames: t1 t5 t6 t7 t8 t9;
end;
