RID=1038588547-028642-15893, lcl|1

Human Genome BLAST Search Results

Commencing search, please wait for results.

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    BLASTP 2.2.4 [Aug-26-2002]

    Reference:
    Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
    Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
    "Gapped BLAST and PSI-BLAST: a new generation of protein database search
    programs",  Nucleic Acids Res. 25:3389-3402.

    RID: 1038588547-028642-15893

    Query= lcl|1
             (87 letters)

    Database: Homo sapiens protein sequences
               39,341 sequences; 15,598,025 total letters

     If you have any problems or questions with the results of this search
    please refer to the BLAST FAQs

    Show positions of the BLAST hits in the human genome using the Entrez Genomes MapViewer

    Taxonomy reports

     Distribution of 1 Blast Hits on the Query Sequence

                                                                     Score    E
    Sequences producing significant alignments:                      (bits) Value

    ref|NP_689464.1|  defensin, beta 106; defensin, beta 6 [Homo...   110   2e-25

    Alignments

    >ref|NP_689464.1| defensin, beta 106; defensin, beta 6 [Homo sapiens]
     gb|AAM93908.1| defensin beta 106 [Homo sapiens]
     dbj|BAC10631.1| beta-defensin-6 [Homo sapiens]
              Length = 65

     Score =  110 bits (274), Expect = 2e-25
     Identities = 49/49 (100%), Positives = 49/49 (100%)

    Query: 21 AKNAFFDEKCNKLKGTCKNNCGKNEELIALCQKSLKCCRTIQPCGSIID 69
              AKNAFFDEKCNKLKGTCKNNCGKNEELIALCQKSLKCCRTIQPCGSIID
    Sbjct: 17 AKNAFFDEKCNKLKGTCKNNCGKNEELIALCQKSLKCCRTIQPCGSIID 65

      Database: Homo sapiens protein sequences
        Posted date:  Nov 27, 2002 12:59 AM
      Number of letters in database: 15,598,025
      Number of sequences in database:  39,341

    Lambda     K      H
       0.327    0.142    0.483

    Gapped
    Lambda     K      H
       0.267   0.0410    0.140

    Matrix: BLOSUM62
    Gap Penalties: Existence: 11, Extension: 1
    Number of Hits to DB: 3,148,972
    Number of Sequences: 39341
    Number of extensions: 121780
    Number of successful extensions: 393
    Number of sequences better than 1.0e-02: 1
    Number of HSP's better than  0.0 without gapping: 1
    Number of HSP's successfully gapped in prelim test: 0
    Number of HSP's that attempted gapping in prelim test: 392
    Number of HSP's gapped (non-prelim): 1
    length of query: 87
    length of database: 15,598,025
    effective HSP length: 63
    effective length of query: 24
    effective length of database: 13,119,542
    effective search space: 314869008
    effective search space used: 314869008
    T: 11
    A: 40
    X1: 15 ( 7.1 bits)
    X2: 38 (14.6 bits)
    X3: 64 (24.7 bits)
    S1: 40 (21.7 bits)
    S2: 79 (35.0 bits)