BLAST Search Results

    BLASTN 2.0.10 [Aug-26-1999]

    Reference:
    Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
    Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
    "Gapped BLAST and PSI-BLAST: a new generation of protein database search
    programs",  Nucleic Acids Res. 25:3389-3402.

    Query= gi|1347201|gb|G24969.1|G24969 human STS EST21946.
             (331 letters)

    Database: Non-redundant Database of GenBank STS Division
               89,405 sequences; 32,867,852 total letters

     If you have any problems or questions with the results of this search
    please refer to the BLAST FAQs

### Distribution of 9 Blast Hits on the Query Sequence

     gb|G24969|G24969 human STS EST21946. >gi|1375315|gb|G27065|G27065 human STS
               SHGC-31731.
               Length = 331

     Score =  656 bits (331), Expect = 0.0
     Identities = 331/331 (100%)
     Strand = Plus / Plus

    Query: 1   cctccaccctctcatgagcaacaggatatgtgaaagtacttgcagccagaagcaaaacca 60
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
    Sbjct: 1   cctccaccctctcatgagcaacaggatatgtgaaagtacttgcagccagaagcaaaacca 60

    Query: 61  caatcctcgggtgctagatggagctccccaaggagcagagaggaaaaggcaggaggagag 120
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
    Sbjct: 61  caatcctcgggtgctagatggagctccccaaggagcagagaggaaaaggcaggaggagag 120

    Query: 121 ggccaggcagcagggatggagactaagtttggcccaaggctgcccgcaagcactgatgcc 180
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
    Sbjct: 121 ggccaggcagcagggatggagactaagtttggcccaaggctgcccgcaagcactgatgcc 180

    Query: 181 atcatgccctctggtaggtgtctatttctgtctgaaccagaaatacaccaagctccacac 240
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
    Sbjct: 181 atcatgccctctggtaggtgtctatttctgtctgaaccagaaatacaccaagctccacac 240

    Query: 241 atgggggctttgctggcttcgacatcactggttcaactatgtcactgctttgttatattt 300
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
    Sbjct: 241 atgggggctttgctggcttcgacatcactggttcaactatgtcactgctttgttatattt 300

    Query: 301 agtgctccagaacctcaggttccttcagatt 331
               |||||||||||||||||||||||||||||||
    Sbjct: 301 agtgctccagaacctcaggttccttcagatt 331

     emb|AL010115|HSPE77H4 H.sapiens flow-sorted chromosome 1 HindIII fragment, SC1pE77H4,
               sequence tagged site [Homo sapiens]
               Length = 554

     Score = 34.2 bits (17), Expect = 0.50
     Identities = 17/17 (100%)
     Strand = Plus / Minus

    Query: 123 ccaggcagcagggatgg 139
               |||||||||||||||||
    Sbjct: 434 ccaggcagcagggatgg 418

     gb|G49267.1|G49267 stbK343C1_96809 chromosome 22 genomic clone Homo sapiens STS
               genomic clone 343C1, sequence tagged site
               Length = 360

     Score = 32.2 bits (16), Expect = 2.0
     Identities = 22/24 (91%)
     Strand = Plus / Minus

    Query: 112 ggaggagagggccaggcagcaggg 135
               ||||||||||| | ||||||||||
    Sbjct: 287 ggaggagaggggctggcagcaggg 264

     gb|G47248.1|G47248 Z17392_1 Zebrafish AB Danio rerio STS genomic clone Z17392 5',
               sequence tagged site
               Length = 454

     Score = 32.2 bits (16), Expect = 2.0
     Identities = 16/16 (100%)
     Strand = Plus / Plus

    Query: 48  agaagcaaaaccacaa 63
               ||||||||||||||||
    Sbjct: 434 agaagcaaaaccacaa 449

     gb|G55412.1|G55412 SHGC-100745 Human Homo sapiens STS genomic, sequence tagged site
               Length = 652

     Score = 32.2 bits (16), Expect = 2.0
     Identities = 16/16 (100%)
     Strand = Plus / Minus

    Query: 99  agaggaaaaggcagga 114
               ||||||||||||||||
    Sbjct: 431 agaggaaaaggcagga 416

     emb|Z53965|HSC009WH1 H.sapiens (D2S2321) DNA segment containing (CA) repeat; clone
               AFMc009wh1; single read, sequence tagged site [Homo
               sapiens]
               Length = 382

     Score = 32.2 bits (16), Expect = 2.0
     Identities = 16/16 (100%)
     Strand = Plus / Plus

    Query: 97  agagaggaaaaggcag 112
               ||||||||||||||||
    Sbjct: 107 agagaggaaaaggcag 122

     gb|G08807|G08807 human STS CHLC.GATA70E11.P18111 clone GATA70E11
               Length = 643

     Score = 32.2 bits (16), Expect = 2.0
     Identities = 16/16 (100%)
     Strand = Plus / Minus

    Query: 100 gaggaaaaggcaggag 115
               ||||||||||||||||
    Sbjct: 482 gaggaaaaggcaggag 467

     gb|G21813|G21813 human STS WI-12408.
               Length = 418

     Score = 32.2 bits (16), Expect = 2.0
     Identities = 16/16 (100%)
     Strand = Plus / Minus

    Query: 47  cagaagcaaaaccaca 62
               ||||||||||||||||
    Sbjct: 193 cagaagcaaaaccaca 178

     gb|G02824|G02824 human STS WI-1312.
               Length = 349

     Score = 32.2 bits (16), Expect = 2.0
     Identities = 16/16 (100%)
     Strand = Plus / Plus

    Query: 286 tgctttgttatattta 301
               ||||||||||||||||
    Sbjct: 111 tgctttgttatattta 126

      Database: Non-redundant Database of GenBank STS Division
        Posted date:  Dec 18, 1999  7:45 PM
      Number of letters in database: 32,867,852
      Number of sequences in database:  89,405

    Lambda     K      H
        1.37    0.711     1.31

    Gapped
    Lambda     K      H
        1.37    0.711     1.31

    Matrix: blastn matrix:1 -3
    Gap Penalties: Existence: 5, Extension: 2
    Number of Hits to DB: 7042
    Number of Sequences: 89405
    Number of extensions: 7042
    Number of successful extensions: 1951
    Number of sequences better than 10.0: 13
    length of query: 331
    length of database: 32,867,852
    effective HSP length: 17
    effective length of query: 314
    effective length of database: 31,347,967
    effective search space: 9843261638
    effective search space used: 9843261638
    T: 0
    A: 0
    X1: 6 (11.9 bits)
    X2: 10 (19.8 bits)
    S1: 12 (24.3 bits)
    S2: 15 (30.2 bits)