BLAST Search Results

    BLASTP 2.0.10 [Aug-26-1999]

    Reference:
    Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
    Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
    "Gapped BLAST and PSI-BLAST: a new generation of protein database search
    programs",  Nucleic Acids Res. 25:3389-3402.

    Query= gi|134196|sp|P23832|SAMB_SALTY SAMB PROTEIN.
             (424 letters)

    Database: Non-redundant SwissProt sequences
               82,258 sequences; 29,652,561 total letters

     If you have any problems or questions with the results of this search
    please refer to the BLAST FAQs

### Distribution of 13 Blast Hits on the Query Sequence

                                                                       Score     E
    Sequences producing significant alignments:                        (bits)  Value

    sp|P23832|SAMB_SALTY  SAMB PROTEIN                                862  0.0
    sp|P18642|IMPB_SALTY  IMPB PROTEIN                                621  e-177
    sp|P04152|UMUC_ECOLI  UMUC PROTEIN                                521  e-148
    sp|P22494|UMUC_SALTY  UMUC PROTEIN                                515  e-146
    sp|P14303|MUCB_SALTY  MUCB PROTEIN                                447  e-125
    sp|P07375|MUCB_ECOLI  MUCB PROTEIN                                444  e-124
    sp|P54560|YQJW_BACSU  HYPOTHETICAL 45.9 KD PROTEIN IN GLNQ-A...   106  1e-22
    sp|P54545|YQJH_BACSU  HYPOTHETICAL 47.0 KD PROTEIN IN GLNQ-A...    92  1e-18
    sp|Q47155|DINP_ECOLI  DNA-DAMAGE-INDUCIBLE PROTEIN P               66  2e-10
    sp|P75241|Y360_MYCPN  HYPOTHETICAL PROTEIN MG360 HOMOLOG           57  9e-08
    sp|Q49426|Y360_MYCGE  HYPOTHETICAL PROTEIN MG360                   42  0.002
    sp|P34409|YLW6_CAEEL  HYPOTHETICAL 59.1 KD PROTEIN F22B7.6 I...    34  0.42

     sp|P23832|SAMB_SALTY SAMB PROTEIN
               Length = 424

     Score =  862 bits (2204), Expect = 0.0
     Identities = 424/424 (100%), Positives = 424/424 (100%)

    Query: 1   MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPRSAEAKKLGIKMGVPWFQLRS 60
               MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPRSAEAKKLGIKMGVPWFQLRS
    Sbjct: 1   MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPRSAEAKKLGIKMGVPWFQLRS 60

    Query: 61  AKFPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDFG 120
               AKFPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDFG
    Sbjct: 61  AKFPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDFG 120

    Query: 121 RQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLSLQ 180
               RQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLSLQ
    Sbjct: 121 RQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLSLQ 180

    Query: 181 PVEEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCISLEE 240
               PVEEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCISLEE
    Sbjct: 181 PVEEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCISLEE 240

    Query: 241 APPPKQQIVCSRSFGERVTTYEAMRQAVCQHAERAAEKLRGERQFCRHIAVFVKTSPFAV 300
               APPPKQQIVCSRSFGERVTTYEAMRQAVCQHAERAAEKLRGERQFCRHIAVFVKTSPFAV
    Sbjct: 241 APPPKQQIVCSRSFGERVTTYEAMRQAVCQHAERAAEKLRGERQFCRHIAVFVKTSPFAV 300

    Query: 301 TEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVDGHRYAKAGCMLNDFTPTGVSQLN 360
               TEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVDGHRYAKAGCMLNDFTPTGVSQLN
    Sbjct: 301 TEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVDGHRYAKAGCMLNDFTPTGVSQLN 360

    Query: 361 LFDEVQPRERSEQLMQVLDGINHPGKGKIWFAGRGIAPEWQMKRELLSPAYTTRWADIPA 420
               LFDEVQPRERSEQLMQVLDGINHPGKGKIWFAGRGIAPEWQMKRELLSPAYTTRWADIPA
    Sbjct: 361 LFDEVQPRERSEQLMQVLDGINHPGKGKIWFAGRGIAPEWQMKRELLSPAYTTRWADIPA 420

    Query: 421 AKLT 424
               AKLT
    Sbjct: 421 AKLT 424

     sp|P18642|IMPB_SALTY IMPB PROTEIN
               Length = 424

     Score =  621 bits (1583), Expect = e-177
     Identities = 298/423 (70%), Positives = 349/423 (82%)

    Query: 1   MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPRSAEAKKLGIKMGVPWFQLRS 60
               MFALAD+NSFYASCEKVFRPDLR+  V+VLSNNDGCVI RS EAK LGI+MG PWFQ+R
    Sbjct: 1   MFALADINSFYASCEKVFRPDLRNEPVIVLSNNDGCVIARSPEAKALGIRMGQPWFQVRQ 60

    Query: 61  AKFPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDFG 120
                +  + +  FSSNYALY SMS RVM  LE L+P VE YSIDEMF+D+RGI+ CI  E FG
    Sbjct: 61  MRLEKKIHVFSSNYALYHSMSQRVMAVLESLSPAVEPYSIDEMFIDLRGINHCISPEFFG 120

    Query: 121 RQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLSLQ 180
                QLRE V+S TGLT+GVG+ PTKTLAKSAQWA+K+W QF GV+ALT  N+ R  KLL LQ
    Sbjct: 121 HQLREQVKSWTGLTMGVGIAPTKTLAKSAQWATKQWPQFSGVVALTAENRNRILKLLGLQ 180

    Query: 181 PVEEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCISLEE 240
               PV E+WGVG R+++KLN +GI TALQLA+AN  FIRKNF+V+LERTVRELNGESCISLEE
    Sbjct: 181 PVGEVWGVGHRLTEKLNALGINTALQLAQANTAFIRKNFSVILERTVRELNGESCISLEE 240

    Query: 241 APPPKQQIVCSRSFGERVTTYEAMRQAVCQHAERAAEKLRGERQFCRHIAVFVKTSPFAV 300
               APP KQQIVCSRSFGER+T  +AM QAV Q+AERAAEKLRGERQ+CR +  FV+TSPFAV
    Sbjct: 241 APPAKQQIVCSRSFGERITDKDAMHQAVVQYAERAAEKLRGERQYCRQVTTFVRTSPFAV 300

    Query: 301 TEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVDGHRYAKAGCMLNDFTPTGVSQLN 360
                EP Y N A EKL +PTQD+RDIIAAA RAL+ +W +G+RY KAG ML DFTP+G++Q
    Sbjct: 301 KEPCYSNAAVEKLPLPTQDSRDIIAAACRALNHVWREGYRYMKAGVMLADFTPSGIAQPG 360

    Query: 361 LFDEVQPRERSEQLMQVLDGINHPGKGKIWFAGRGIAPEWQMKRELLSPAYTTRWADIPA 420
               LFDE+QPR+ SE+LM+ LD +N  GKGK+WFAGRG APEWQMKRE+LS  YTT+W DIP
    Sbjct: 361 LFDEIQPRKNSEKLMKTLDELNQSGKGKVWFAGRGTAPEWQMKREMLSQCYTTKWRDIPL 420

    Query: 421 AKL 423
               A+L
    Sbjct: 421 ARL 423

     sp|P04152|UMUC_ECOLI UMUC PROTEIN
               Length = 422

     Score =  521 bits (1328), Expect = e-148
     Identities = 265/424 (62%), Positives = 318/424 (74%), Gaps = 4/424 (0%)

    Query: 1   MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPRSAEAKKLGIKMGVPWFQLRS 60
               MFAL DVN+FYASCE VFRPDL  + VVVLSNNDGCVI R+AEAK LG+KMG PWF+ +
    Sbjct: 1   MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEAKALGVKMGDPWFKQKD 60

    Query: 61  AKFPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDFG 120
                     V+ FSSNY LYA MSNRVM  LEEL+PRVE YSIDE F D+ G+ +C D  DFG
    Sbjct: 61  LFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120

    Query: 121 RQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWS-QFGGVLALTLHNQKRTEKLLSL 179
               R++R  V   T LT+GVG+  TKTLAK A  A+K+W  Q GGV+ L+  N +R  KL+S
    Sbjct: 121 REIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTGGVVDLS--NLERQRKLMSA 178

    Query: 180 QPVEEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCISLE 239
                PV+++WG+GRRISKKL+ MGI T L LA  +  FIRK+FNVVLERTVREL GE C+ LE
    Sbjct: 179 LPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHFNVVLERTVRELRGEPCLQLE 238

    Query: 240 EAPPPKQQIVCSRSFGERVTTYEAMRQAVCQHAERAAEKLRGERQFCRHIAVFVKTSPFA 299
               E  P KQ+I+CSRSFGER+T Y +MRQA+C +A RAAEKLR E Q+CR I+ F+KTSPFA
    Sbjct: 239 EFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAEKLRSEHQYCRFISTFIKTSPFA 298

    Query: 300 VTEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVDGHRYAKAGCMLNDFTPTGVSQL 359
               + EPYYGN AS KLL PTQD+RDII AA R+LD IW  GHRY KAG ML DF   GV+QL
    Sbjct: 299 LNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIWQAGHRYQKAGVMLGDFFSQGVAQL 358

    Query: 360 NLFDEVQPRERSEQLMQVLDGIN-HPGKGKIWFAGRGIAPEWQMKRELLSPAYTTRWADI 418
               NLFD+  PR  SEQLM V+D +N   G+G ++FAG+GI  +WQMKR +LSP YTTR +D+
    Sbjct: 359 NLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFAGQGIQQQWQMKRAMLSPRYTTRSSDL 418

    Query: 419 PAAK 422
                  K
    Sbjct: 419 LRVK 422

     sp|P22494|UMUC_SALTY UMUC PROTEIN
               Length = 422

     Score =  515 bits (1313), Expect = e-146
     Identities = 267/424 (62%), Positives = 317/424 (73%), Gaps = 4/424 (0%)

    Query: 1   MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPRSAEAKKLGIKMGVPWFQLRS 60
               MFAL DVNSFYASCE VFRPDL  R VVVLSNNDGCVI  SAEAK+LGI  G P+F+ +
    Sbjct: 1   MFALCDVNSFYASCETVFRPDLCGRPVVVLSNNDGCVIACSAEAKQLGIAPGEPYFKQKE 60

    Query: 61  AKFPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDFG 120
                     V+ FSSNY LYA MSNRVM  LEE+ PRVE YSIDE F D+ G+ +C D  DFG
    Sbjct: 61  RFRRSGVVCFSSNYELYADMSNRVMTTLEEMVPRVEIYSIDEAFCDLTGVRNCRDLTDFG 120

    Query: 121 RQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWS-QFGGVLALTLHNQKRTEKLLSL 179
               R++R  V   T LT+GVG+  TKTLAK A  A+K+W  Q  GV+ L+  N  R  +LL+L
    Sbjct: 121 REIRATVLKRTHLTVGVGIAQTKTLAKLANHAAKKWQRQTDGVVDLS--NIDRQRRLLAL 178

    Query: 180 QPVEEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCISLE 239
                PVE++WGVGRRISKKLN +GI TAL L+  +   IRK+FNVVLERTVREL GE C+ LE
    Sbjct: 179 IPVEDVWGVGRRISKKLNALGIKTALDLSEQSTWIIRKHFNVVLERTVRELRGEPCLELE 238

    Query: 240 EAPPPKQQIVCSRSFGERVTTYEAMRQAVCQHAERAAEKLRGERQFCRHIAVFVKTSPFA 299
               E  P KQ+IVCSRSFGERVT YE MRQAV  +A RAAEKLRGE Q+CR I+ FVKTSPFA
    Sbjct: 239 EFAPAKQEIVCSRSFGERVTDYEEMRQAVYSYAARAAEKLRGEHQYCRFISTFVKTSPFA 298

    Query: 300 VTEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVDGHRYAKAGCMLNDFTPTGVSQL 359
               + EPYYGN A+  LL PTQD+RDII AAV+ LD+IW DGHRY KAG ML DF   GV+QL
    Sbjct: 299 LNEPYYGNSAAVTLLTPTQDSRDIINAAVKCLDKIWRDGHRYQKAGVMLGDFFSQGVAQL 358

    Query: 360 NLFDEVQPRERSEQLMQVLDGIN-HPGKGKIWFAGRGIAPEWQMKRELLSPAYTTRWADI 418
               NLFD+  PR  S +LM+VLD +N   GKG ++FAG+G++ +W MKRE+LSP YTTR++D+
    Sbjct: 359 NLFDDNAPRAGSAKLMEVLDHLNAKDGKGTLYFAGQGMSQQWAMKREMLSPRYTTRYSDL 418

    Query: 419 PAAK 422
                  K
    Sbjct: 419 LRVK 422

     sp|P14303|MUCB_SALTY MUCB PROTEIN
               Length = 421

     Score =  447 bits (1137), Expect = e-125
     Identities = 239/423 (56%), Positives = 292/423 (68%), Gaps = 3/423 (0%)

    Query: 1   MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPRSAEAKKLGIKMGVPWFQLRS 60
               MFAL DVN  YASCE+ FRPDL +R+V VLSNNDG ++ R+  AKK G+KMG P+F++R
    Sbjct: 1   MFALIDVNGMYASCEQAFRPDLANRAVAVLSNNDGNIVARNYLAKKAGLKMGDPYFKVRP 60

    Query: 61  AKFPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDFG 120
                     +  FSSNY LYASMS R    +E LA  VEQYSIDE+F+D +GI + +  + FG
    Sbjct: 61  IIERHNIAIFSSNYTLYASMSARFAAVVESLASHVEQYSIDELFVDCKGITAAMSLDAFG 120

    Query: 121 RQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLSLQ 180
               RQLRE VR  T L  GVG+  TKTLAK    A+K W   GGV+AL   +  R +KL+S+
    Sbjct: 121 RQLREEVRRHTTLVCGVGIARTKTLAKLCNHAAKTWPATGGVVALD--DGARLKKLMSIL 178

    Query: 181 PVEEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCISLEE 240
               PV E+WGVG R  K L TMGI T L LARA+   IRK F VVLERTVREL GE+C SLEE
    Sbjct: 179 PVAEVWGVGHRTEKALATMGIKTVLDLARADTRLIRKTFGVVLERTVRELRGEACFSLEE 238

    Query: 241 APPPKQQIVCSRSFGERVTTYEAMRQAVCQHAERAAEKLRGERQFCRHIAVFVKTSPFAV 300
                PP KQQIV SRSFG+RV T   M+QAV   A RAAEKLR ERQ+CR I+VF++TSP++V
    Sbjct: 239 NPPAKQQIVVSRSFGQRVETLTDMQQAVTGFAARAAEKLRNERQYCRVISVFIRTSPYSV 298

    Query: 301 TEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVDGHRYAKAGCMLNDFTPTGVSQLN 360
                +  Y N A+EKL + TQD+R II AA  AL RIW +   YAKAG ML DF+    +QL+
    Sbjct: 299 RDTQYANQATEKLTVATQDSRTIIQAAQAALARIWREDIAYAKAGVMLADFSGK-EAQLD 357

    Query: 361 LFDEVQPRERSEQLMQVLDGINHPGKGKIWFAGRGIAPEWQMKRELLSPAYTTRWADIPA 420
               LFD   P   SE LM VLDGIN  GK +++FAG+GI   + M+R++LSP YTT W  IP
    Sbjct: 358 LFDSATPSAGSEALMAVLDGINRRGKNQLFFAGQGIDNSFAMRRQMLSPDYTTDWRSIPI 417

    Query: 421 AKL 423
               A +
    Sbjct: 418 ATI 420

     sp|P07375|MUCB_ECOLI MUCB PROTEIN
               Length = 420

     Score =  444 bits (1129), Expect = e-124
     Identities = 239/423 (56%), Positives = 293/423 (68%), Gaps = 4/423 (0%)

    Query: 1   MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPRSAEAKKLGIKMGVPWFQLRS 60
               MFAL DVN  YASCE+ FRPDL +R+V VLSNNDG ++ R+  AKK G+KMG P+F++R
    Sbjct: 1   MFALIDVNGMYASCEQAFRPDLANRAVAVLSNNDGNIVARNYLAKKAGLKMGDPYFKVRP 60

    Query: 61  AKFPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDFG 120
                     +  FSSNY LYASMS R    +E LA  VEQYSIDE+F+D +GI + +  + FG
    Sbjct: 61  IIERHNIAIFSSNYTLYASMSARFAAVVESLASHVEQYSIDELFVDCKGITAAMSLDAFG 120

    Query: 121 RQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLSLQ 180
               RQLRE VR  T L  GVG+  TKTLAK    A+K W   GGV+AL   +  R +KL+S+
    Sbjct: 121 RQLREEVRRHTTLVCGVGIARTKTLAKLCNHAAKTWPATGGVVALD--DGARLKKLMSIL 178

    Query: 181 PVEEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCISLEE 240
               PV E+WGVG R  K L TMGI T L LARA+   IRK F VVLERTVREL GE+C SLEE
    Sbjct: 179 PVAEVWGVGHRTEKALATMGIKTVLDLARADTRLIRKTFGVVLERTVRELRGEACFSLEE 238

    Query: 241 APPPKQQIVCSRSFGERVTTYEAMRQAVCQHAERAAEKLRGERQFCRHIAVFVKTSPFAV 300
                PP KQQIV SRSFG+RV T   M+QAV   A RAAEKLR ERQ+CR I+VF++TSP++V
    Sbjct: 239 NPPAKQQIVVSRSFGQRVETLTDMQQAVTGFAARAAEKLRNERQYCRVISVFIRTSPYSV 298

    Query: 301 TEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVDGHRYAKAGCMLNDFTPTGVSQLN 360
                +  Y N A+EKL + TQD+R II AA +AL RIW +   YAKAG ML DF+    +QL+
    Sbjct: 299 RDTQYANQATEKLTVATQDSRTIIQAA-QALARIWREDIAYAKAGVMLADFSGK-EAQLD 356

    Query: 361 LFDEVQPRERSEQLMQVLDGINHPGKGKIWFAGRGIAPEWQMKRELLSPAYTTRWADIPA 420
               LFD   P   SE LM VLDGIN  GK +++FAG+GI   + M+R++LSP YTT W  IP
    Sbjct: 357 LFDSATPSAGSEALMAVLDGINRRGKNQLFFAGQGIDNSFAMRRQMLSPDYTTDWRSIPI 416

    Query: 421 AKL 423
               A +
    Sbjct: 417 ATI 419

     sp|P54560|YQJW_BACSU HYPOTHETICAL 45.9 KD PROTEIN IN GLNQ-ANSR INTERGENIC REGION
               Length = 412

     Score =  106 bits (261), Expect = 1e-22
     Identities = 107/393 (27%), Positives = 171/393 (43%), Gaps = 33/393 (8%)

    Query: 4   LADVNSFYASCEKVFRPDLRDRSVVVLSNND---GCVIPRSAEAKKLGIKMGVPWFQLRS 60
               L D+ SFYAS EK   P L++R V+V  + +   G V+     AK+ G+      ++ +
    Sbjct: 9   LVDMQSFYASVEKAENPHLKNRPVIVSGDPEKRGGVVLAACPLAKQKGVVNASRLWEAQE 68

    Query: 61  AKFPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFE-DF 119
                K PE V+        Y  +S ++   LEE    VE YSIDE F+DI G         +
    Sbjct: 69  -KCPEAVV-LRPRMQRYIDVSLQITAILEEYTDLVEPYSIDEQFMDITGSQKLFGTPMEI 126

    Query: 120 GRQLREHVRSGTGLTIGVGMGPTKTLAKSA--QWASKEWSQFGGVLALTLHNQKRTEKLL 177
                + ++  +    G+   VG+GP K LAK A   +A K  +   G+  LT  N K     L
    Sbjct: 127 AKSIQGRIMREIGVYARVGIGPNKALAKIACDNFAKKNKN---GIFTLTKENMKTEMWPL 183

    Query: 178 SLQPVEEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCIS 237
                  PV  ++GVG R+   LN MGI+T   LA      ++K + +         NG
    Sbjct: 184 ---PVGSMFGVGSRMKHHLNRMGISTIGGLAAFPLDLLKKKWGINGHVLWMTANG----- 235

    Query: 238 LEEAPPPKQQIVCSRSFGERVT---TYE----AMRQAVCQHAERAAEKLRGERQFCRHIA 290
               ++ +P     +   ++ G  +T    YE     ++  + + +E    + R      + ++
    Sbjct: 236 IDYSPVSTSSLDGQKAIGHGMTLPRDYEHFDKEIKVVLLELSEEVCRRSRNAGVMGQTVS 295

    Query: 291 VFVKTSPFAVTEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVDGHRYAKAGCMLND 350
               V  + + F     +   +   KL  PT  T+D+  A  R     W DG    + G  L+
    Sbjct: 296 VSCRGADFDWPTGFNRQV---KLAEPTNSTQDVYEAVRRLFLTFW-DGKPVRRLGVNLSQ 351

    Query: 351 FTPTGVSQLNLFDEVQPRERSEQLMQVLDGINH 383
                +   + QLNLF   Q   +   L  V+DGI +
    Sbjct: 352 LSSDDIWQLNLF---QDYAKKMSLGYVMDGIKN 381

     sp|P54545|YQJH_BACSU HYPOTHETICAL 47.0 KD PROTEIN IN GLNQ-ANSR INTERGENIC REGION
               Length = 414

     Score = 92.4 bits (226), Expect = 1e-18
     Identities = 73/257 (28%), Positives = 121/257 (46%), Gaps = 17/257 (6%)

    Query: 6   DVNSFYASCEKVFRPDLRDRSVVVLSN---NDGCVIPRSAEAKKLGIKMGVPWFQLRSAK 62
               D+NSFYAS E  + P LR + V V  N     G V+  S EA+  G+K  +P +Q +
    Sbjct: 12  DMNSFYASVEMAYDPALRGKPVAVAGNVKERKGIVVTCSYEARARGVKTTMPVWQAKR-H 70

    Query: 63  FPEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDFGRQ 122
                PE +I    N+  Y + S  +   L E    VE  SIDE ++D+          +  ++
    Sbjct: 71  CPE-LIVLPPNFDRYRNSSRAMFTILREYTDLVEPVSIDEGYMDMTDTPYSSRALETAKE 129

    Query: 123 LREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLSLQPV 182
               ++  ++    L   +G+ P K LAK A    K        L +T+  +++   +L   PV
    Sbjct: 130 IQSRLQKELLLPSSIGIAPNKFLAKMASDMKKP-------LGITILRKRQVPDILWPLPV 182

    Query: 183 EEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNFNVVLERTVRELNGESCISLEEAP 242
                E+ GVG++ ++KL  +GI T  +LA A+   +++   +   R   + NG     +  AP
    Sbjct: 183 GEMHGVGKKTAEKLKGLGIHTIGELAAADEHSLKRLLGINGPRLKNKANG-----IHHAP 237

    Query: 243 PPKQQIVCSRSFGERVT 259
                  ++I   +S G   T
    Sbjct: 238 VDPERIYEFKSVGNSST 254

     sp|Q47155|DINP_ECOLI DNA-DAMAGE-INDUCIBLE PROTEIN P
               Length = 351

     Score = 65.6 bits (157), Expect = 2e-10
     Identities = 74/341 (21%), Positives = 139/341 (40%), Gaps = 41/341 (12%)

    Query: 6   DVNSFYASCEKVFRPDLRDRSVVVLSNND--GCVIPRSAEAKKLGIKMGVPWFQLRSAKF 63
               D++ F+A+ E    P LRD  + +  + +  G +   +  A+K G++  +P     + K
    Sbjct: 8   DMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGM--ALKL 65

    Query: 64  PEPVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDIRGIDSCIDFEDF-GRQ 122
                  +      +  Y   SN +         R+E  S+DE +LD+     C        ++
    Sbjct: 66  CPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQE 125

    Query: 123 LREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLSLQPV 182
               +R+ + +   LT   G+ P K LAK A   +K   QF       +         L   P+
    Sbjct: 126 IRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNGQF-------VITPAEVPAFLQTLPL 178

    Query: 183 EEIWGVGRRISKKLNTMGITTALQLARANPTFIRKNF----NVVLERT----VRELNGES 234
                +I GVG+  + KL  MG+ T   + + +   + K F     ++ ER+     R++N E
    Sbjct: 179 AKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKFGRILWERSQGIDERDVNSER 238

    Query: 235 CISLEEAPPPKQQIVCSRSFGERV---TTYEAMRQAVCQHAERAAEKLRGERQFCRHIAV 291
                         ++ +   R+  E +   +  EA+ + +    ER   K++ +    R   V
    Sbjct: 239 L---------RKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQ-GV 288

    Query: 292 FVKTSPFAVTEPYYGNLASEKLLIPTQDTRDIIAAAVRALD 332
                +K   F  T        +++ + P  +  D+IA A +  D
    Sbjct: 289 KLKFDDFQQT--------TQEHVWPRLNKADLIATARKTWD 321

     sp|P75241|Y360_MYCPN HYPOTHETICAL PROTEIN MG360 HOMOLOG
               Length = 412

     Score = 56.6 bits (134), Expect = 9e-08
     Identities = 76/343 (22%), Positives = 145/343 (42%), Gaps = 32/343 (9%)

    Query: 1   MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPR-SAEAKKLGIKMGVPWFQLR 59
               +F   D ++F+AS E++  P+L+++ ++V +     V+   +  A+  GIK G+P    +
    Sbjct: 19  LFFYFDFDAFFASVEEIENPELKNQPLIVGNRTSRSVVSTCNYLARSYGIKSGMP--IAK 76

    Query: 60  SAKFPEPVIAFSSNYALYASMSNRVMVHL-EELAPRVEQYSIDEMFLDIRGIDSCIDFED 118
               + +     I  +S++  Y   S ++   + E+    V   SIDE F+  R +     F
    Sbjct: 77  ALELCPQAIFATSHFRNYRKYSAKIFAMIAEQFNLEVHTLSIDEGFVCFRDLSPRKAF-S 135

    Query: 119 FGRQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLS 178
                 ++++ HV       I +G+    TLAK     +K +    GV +      KR  KL
    Sbjct: 136 LAKRIQRHVYEQLNFHISIGISNQFTLAKIFSNQAKPF----GVKSCFSKEVKR--KLWP 189

    Query: 179 LQPVEEIWGVGRRISKKLNTMGITTALQLARA-NPTFIRKNFNVVLERTVRELNGESCIS 237
               L P+ E+ G+G+R               LA+  + T  ++ F +  E           ++
    Sbjct: 190 L-PIVELPGIGKRQLDNAFKNNFHKIGDLAKCKDVTLFKRVFGIAWESL-------HAVA 241

    Query: 238 LEEAPPPKQQIVCSRSFGERVT------TYEAMRQAVCQHAERAAEKLRGERQFCRHIAV 291
               L E     +Q V SRS     T      +   ++Q +         +L+   Q C+ + V
    Sbjct: 242 LGETYTQSEQDVKSRSIAVSETLEYLNYSSNQLQQKLTSIFNELYARLQLSFQMCKGVVV 301

    Query: 292 FVKTSPFAVTEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRI 334
                +K++ F V      N  S+ +   T D + ++    +  +R+
    Sbjct: 302 QLKSNDFIV------NSHSQSIKKYTADYQTLLVIVKKLFNRL 338

     sp|Q49426|Y360_MYCGE HYPOTHETICAL PROTEIN MG360
               Length = 411

     Score = 41.8 bits (96), Expect = 0.002
     Identities = 73/353 (20%), Positives = 152/353 (42%), Gaps = 46/353 (13%)

    Query: 1   MFALADVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPR-SAEAKKLGIKMGVPWFQLR 59
               +F   D ++F+AS E++  P+L ++ ++V +     V+   +  A+  GI+ G+    L+
    Sbjct: 19  IFLYFDFDAFFASVEELENPELVNQPLIVGNRFSRSVVSTCNYVARSYGIRSGMS--ILK 76

    Query: 60  SAKFPEPVIAFSSNYALYASMSNRVMVHLEE-LAPRVEQYSIDEMFLDIRGIDSCIDFED 118
               + +     I   SN+  Y   S R+   +E   + +++  S+DE     + I     F
    Sbjct: 77  ALELCPNAIFAHSNFRNYRKHSKRIFSVIESTFSLKIDVLSVDEGVACFQNISFKKAFL- 135

    Query: 119 FGRQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRTEKLLS 178
                 ++++  V     + I +G+     +AK     +K +    G+ + ++ + K+  KL
    Sbjct: 136 IAKKIKNFVFQNLRIKISIGISDHFLIAKIFSNQAKPF----GIKSCSVKDIKK--KLWP 189

    Query: 179 LQPVEEIWGVGRR----ISK----KLNTMGITTALQLARANPTFIRKNFNVVLERTVREL 230
               L P+ EI G+G +    + K    K+N + +         + + ++K F    E
    Sbjct: 190 L-PITEIPGIGEKHIDLVFKNNFYKINDLAVC-------EDASLLKKVFGNFWESL---- 237

    Query: 231 NGESCISLEEAPPPKQQIVCSRSFGERVT------TYEAMRQAVCQHAERAAEKLRGERQ 284
                    +SL +        V SRSF    T      +   + + + Q  ++   +L+   Q
    Sbjct: 238 ---KAVSLGKWYTDNNNQVKSRSFAVSETLEDLNYSNNQLNKKLTQIFDQLFIRLQLSSQ 294

    Query: 285 FCRHIAVFVKTSPFAVTEPYYGNLASEKLLIPTQDTRDIIAAAVRALDRIWVD 337
                C+ I V +K++ F V      N  S K+   + D R +++   R  +R+ ++
    Sbjct: 295 VCKGIVVQLKSNDFIV------NSHSNKMKKYSNDYRKLLSITKRLFNRLLIN 341

     sp|P34409|YLW6_CAEEL HYPOTHETICAL 59.1 KD PROTEIN F22B7.6 IN CHROMOSOME III
               Length = 518

     Score = 34.4 bits (77), Expect = 0.42
     Identities = 25/102 (24%), Positives = 47/102 (45%), Gaps = 4/102 (3%)

    Query: 6   DVNSFYASCEKVFRPDLRDRSVVVLSNNDGCVIPRSAEAKKLGIKMGVPWFQLRSAKFPE 65
               D+++++A+ E    P LR  +V +   +   +   +  A++ G++ G+P F   S K
    Sbjct: 89  DMDAYFAAVEMRDNPALR--TVPMAVGSSAMLSTSNYLARRFGVRAGMPGFI--SNKLCP 144

    Query: 66  PVIAFSSNYALYASMSNRVMVHLEELAPRVEQYSIDEMFLDI 107
                +     NY  Y  +S +      E    V   S+DE F+D+
    Sbjct: 145 SLTIVPGNYPKYTKVSRQFSQIFMEYDSDVGMMSLDEAFIDL 186

     Score = 34.0 bits (76), Expect = 0.55
     Identities = 26/88 (29%), Positives = 38/88 (42%), Gaps = 7/88 (7%)

    Query: 117 EDFGRQLREHVRSGTGLTIGVGMGPTKTLAKSAQWASKEWSQFGGVLALTLHNQKRT-EK 175
               E+  R++R  V   TGLT   G+     LAK     +K   Q+       L N K    +
    Sbjct: 253 EEAVREIRFRVEQLTGLTCSAGIASNFMLAKICSDLNKPNGQY------VLENDKNAIME 306

    Query: 176 LLSLQPVEEIWGVGRRISKKLNTMGITT 203
                L   P+ ++ G+GR    +L  M I T
    Sbjct: 307 FLKDLPIRKVGGIGRVCEAQLKAMDIQT 334

      Database: Non-redundant SwissProt sequences
        Posted date:  Dec 27, 1999  4:57 PM
      Number of letters in database: 29,652,561
      Number of sequences in database:  82,258

    Lambda     K      H
       0.321    0.135    0.406

    Gapped
    Lambda     K      H
       0.270   0.0470    0.230

    Matrix: BLOSUM62
    Gap Penalties: Existence: 11, Extension: 1
    Number of Hits to DB: 24755695
    Number of Sequences: 82258
    Number of extensions: 1024142
    Number of successful extensions: 2292
    Number of sequences better than 10.0: 12
    Number of HSP's better than 10.0 without gapping: 8
    Number of HSP's successfully gapped in prelim test: 4
    Number of HSP's that attempted gapping in prelim test: 2264
    Number of HSP's gapped (non-prelim): 13
    length of query: 424
    length of database: 29,652,561
    effective HSP length: 51
    effective length of query: 373
    effective length of database: 25,457,403
    effective search space: 9495611319
    effective search space used: 9495611319
    T: 11
    A: 40
    X1: 16 ( 7.4 bits)
    X2: 38 (14.8 bits)
    X3: 64 (24.9 bits)
    S1: 41 (21.9 bits)
    S2: 66 (30.1 bits)